CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays
| العنوان: | CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays |
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| المؤلفون: | Isaac S. Kohane, Byoung-Tak Zhang, Peter J. Park, Kyu-Baek Hwang, Richard D. Kim, Sek Won Kong, Steven A. Greenberg |
| المصدر: | Bioinformatics. 21:2116-2117 |
| بيانات النشر: | Oxford University Press (OUP), 2005. |
| سنة النشر: | 2005 |
| مصطلحات موضوعية: | Statistics and Probability, Gene Expression Profiling, Information Storage and Retrieval, Sequence Analysis, DNA, Biology, USable, computer.software_genre, Biochemistry, Article, Computer Science Applications, World Wide Web, Computational Mathematics, Upload, Computational Theory and Mathematics, Gene chip analysis, Affymetrix genechip, Data mining, Affymetrix GeneChip Operating Software, DNA Probes, Sequence Alignment, Molecular Biology, computer, Algorithms, Software, Oligonucleotide Array Sequence Analysis |
| الوصف: | Summary: To increase compatibility between different generations of Affymetrix GeneChip arrays, we propose a method of filtering probes based on their sequences. Our method is implemented as a web-based service for downloading necessary materials for converting the raw data files (*.CEL) for comparative analysis. The user can specify the appropriate level of filtering by setting the criteria for the minimum overlap length between probe sequences and the minimum number of usable probe pairs per probe set. Our website supports a within-species comparison for human and mouse GeneChip arrays. Availability: http://www.crosschip.orgTest Contact: skong@cgr.harvard.edu |
| تدمد: | 1460-2059 1367-4803 |
| الوصول الحر: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::85e8321f1f53061fc348612446d51d1eTest https://doi.org/10.1093/bioinformatics/bti288Test |
| حقوق: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....85e8321f1f53061fc348612446d51d1e |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 14602059 13674803 |
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