Automated AI labeling of optic nerve head enables insights into cross-ancestry glaucoma risk and genetic discovery in >280,000 images from UKB and CLSA

التفاصيل البيبلوغرافية
العنوان: Automated AI labeling of optic nerve head enables insights into cross-ancestry glaucoma risk and genetic discovery in >280,000 images from UKB and CLSA
المؤلفون: Xikun Han, Alex W. Hewitt, Owen M. Siggs, Henry Marshall, Kaiah Steven, Jamie E Craig, Puya Gharahkhani, Michael Tremeer, Ayub Qassim, Cameron Bean, Stuart MacGregor, Jiyuan An, Maciej Trzaskowski
المصدر: Am J Hum Genet
بيانات النشر: Elsevier, 2021.
سنة النشر: 2021
مصطلحات موضوعية: 0301 basic medicine, Adult, Male, Intraocular pressure, medicine.medical_specialty, genetic structures, Optic Disk, Inheritance Patterns, Disc diameter, Glaucoma, Genome-wide association study, Biology, Glaucomatous optic neuropathy, Polymorphism, Single Nucleotide, Article, 03 medical and health sciences, 0302 clinical medicine, Artificial Intelligence, Risk Factors, Normal tension glaucoma, Ophthalmology, Genetics, medicine, Image Processing, Computer-Assisted, Photography, Humans, Genetics (clinical), Intraocular Pressure, Aged, High rate, Middle Aged, medicine.disease, 030104 developmental biology, Optic nerve, Female, sense organs, Nerve Net, 030217 neurology & neurosurgery, Algorithms, Genome-Wide Association Study
الوصف: Cupping of the optic nerve head, a highly heritable trait, is a hallmark of glaucomatous optic neuropathy. Two key parameters are vertical cup-to-disc ratio (VCDR) and vertical disc diameter (VDD). However, manual assessment often suffers from poor accuracy and is time intensive. Here, we show convolutional neural network models can accurately estimate VCDR and VDD for 282,100 images from both UK Biobank and an independent study (Canadian Longitudinal Study on Aging), enabling cross-ancestry epidemiological studies and new genetic discovery for these optic nerve head parameters. Using the AI approach, we perform a systematic comparison of the distribution of VCDR and VDD and compare these with intraocular pressure and glaucoma diagnoses across various genetically determined ancestries, which provides an explanation for the high rates of normal tension glaucoma in East Asia. We then used the large number of AI gradings to conduct a more powerful genome-wide association study (GWAS) of optic nerve head parameters. Using the AI-based gradings increased estimates of heritability by ∼50% for VCDR and VDD. Our GWAS identified more than 200 loci associated with both VCDR and VDD (double the number of loci from previous studies) and uncovered dozens of biological pathways; many of the loci we discovered also confer risk for glaucoma.
اللغة: English
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ecbb57f3ae02681b146df2220a965378Test
https://europepmc.org/articles/PMC8322932Test/
حقوق: OPEN
رقم الانضمام: edsair.doi.dedup.....ecbb57f3ae02681b146df2220a965378
قاعدة البيانات: OpenAIRE