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Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

التفاصيل البيبلوغرافية
العنوان: Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
المؤلفون: Abeshouse, A., Adebamowo, C., Adebamowo, S. N., Akbani, R., Akeredolu, T., Ally, A., Anderson, M. L., Anur, P., Appelbaum, E. L., Armenia, J., Auman, J. T., Bailey, M. H., Baker, L., Balasundaram, M., Balu, S., Barthel, F. P., Bartlett, J., Baylin, S. B., Behera, M., Belyaev, D., Bennett, J., Benz, C., Beroukhim, R., Birrer, M., Bocklage, T., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., Boyd, J., Brohl, A. S., Brooks, D., Byers, L., Carlsen, R., Castro, P., Chen, H. W., Cherniack, A. D., Chibon, F., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cooper, L. A. D., Cope, L., Cordes, M. G., Crain, D., Curley, E., Danilova, L., Dao, F., Davis, I. J., Davis, L. E., Defreitas, T., Delman, K., Demchok, J. A., Demetri, G. D., Demicco, E. G., Dhalla, N., Diao, L., Ding, L., DiSaia, P., Dottino, P., Doyle, L. A., Drill, E., Dubina, M., Eschbacher, J., Fedosenko, K., Felau, I., Ferguson, M. L., Frazer, S., Fronick, C. C., Fulidou, V., Fulton, L. A., Fulton, R. S., Gabriel, S. B., Gao, J., Gao, Q., Gardner, J., Gastier-Foster, J. M., Gay, C. M., Gehlenborg, N., Gerken, M., Getz, G., Godwin, A. K., Godwin, E. M., Gordienko, E., Grilley-Olson, J. E., Gutman, D. A., Gutmann, D. H., Hayes, D. N., Hegde, A. M., Heiman, D. I., Heins, Z., Helsel, C., Hepperla, A. J., Higgins, K., Hoadley, K. A., Hobensack, S., Holt, R. A., Hoon, D. B., Hornick, J. L., Hoyle, A. P., Hu, X., Huang, M., Hutter, C. M., Iacocca, M., Ingram, D. R., Ittmann, M., Iype, L., Jefferys, S. R., Jones, K. B., Jones, C. D., Jones, S. J. M., Kalir, T., Karlan, B. Y., Karseladze, A., Kasaian, K., Kim, J., Kundra, R., Kuo, H., Ladanyi, M., Lai, P. H., Laird, P. W., Larsson, E., Lawrence, M. S., Lazar, A. J., Lee, S., Lee, D., Lehmann, K. V., Leraas, K. M., Lester, J., Levine, D. A., Li, I., Lichtenberg, T. M., Lin, P., Liu, J., Liu, W., Liu, E. M., Lolla, L., Lu, Y., Ma, Y., Madan, R., Maglinte, D. T., Magliocco, A., Maki, R. G., Mallery, D., Manikhas, G., Mardis, E. R., Mariamidze, A., Marra, M. A., Martignetti, J. A., Martinez, C., Mayo, M., McLellan, M. D., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, C. A., Mills, G. B., Moore, R. A., Morris, S., Mose, L. E., Mozgovoy, E., Mungall, A. J., Mungall, K., Nalisnik, M., Naresh, R., Newton, Y., Noble, M. S., Novak, J. E., Ochoa, A., Olvera, N., Owonikoko, T. K., Paklina, O., Parfitt, J., Parker, J. S., Pastore, A., Paulauskis, J., Penny, R., Pereira, E., Perou, C. M., Perou, A. H., Pihl, T., Pollock, R. E., Potapova, O., Radenbaugh, A. J., Ramalingam, S. S., Ramirez, N. C., Rathmell, W. K., Raut, C. P., Riedel, R. F., Reilly, C., Reynolds, S. M., Roach, J., Robertson, A. G., Roszik, J., Rubin, B. P., Sadeghi, S., Saksena, G., Salner, A., Sanchez-Vega, F., Sander, C., Schein, J. E., Schmidt, H. K., Schultz, N., Schumacher, S. E., Sekhon, H., Senbabaoglu, Y., Setdikova, G., Shelton, C., Shelton, T., Shen, R., Shi, Y., Shih, J., Shmulevich, I., Sica, G. L., Simons, J. V., Singer, S., Sipahimalani, P., Skelly, T., Socci, N., Sofia, H. J., Soloway, M. G., Spellman, P., Sun, Q., Swanson, P., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thompson, E., Thorne, L. B., Tong, P., Torres, K. E., van de Rijn, M., Van Den Berg, D. J., Van Tine, B. A., Veluvolu, U., Verhaak, R., Voet, D., Voronina, O., Wan, Y., Wang, Z., Wang, J., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wilson, R. K., Wise, L., Wong, T., Wong, W., Wrangle, J., Wu, Y., Wyczalkowski, M., Yang, L., Yau, C., Yellapantula, V., Zenklusen, J. C., Zhang, J. J., Zhang, H., Zmuda, E., The Cancer Genome Atlas Research, Network
سنة النشر: 2017
المجموعة: Cold Spring Harbor Laboratory: CSHL Institutional Repository
مصطلحات موضوعية: DNA methylation, comparative genomics, sarcoma
الوصف: Sarcomas are a broad family of mesenchymal malignancies exhibiting remarkable histologic diversity. We describe the multi-platform molecular landscape of 206 adult soft tissue sarcomas representing 6 major types. Along with novel insights into the biology of individual sarcoma types, we report three overarching findings: (1) unlike most epithelial malignancies, these sarcomas (excepting synovial sarcoma) are characterized predominantly by copy-number changes, with low mutational loads and only a few genes (TP53, ATRX, RB1) highly recurrently mutated across sarcoma types; (2) within sarcoma types, genomic and regulomic diversity of driver pathways defines molecular subtypes associated with patient outcome; and (3) the immune microenvironment, inferred from DNA methylation and mRNA profiles, associates with outcome and may inform clinical trials of immune checkpoint inhibitors. Overall, this large-scale analysis reveals previously unappreciated sarcoma-type-specific changes in copy number, methylation, RNA, and protein, providing insights into refining sarcoma therapy and relationships to other cancer types. Genetic analysis of soft tissue sarcomas shows that they are characterized predominantly by copy-number changes and offers insights into the immune microenviroment to inform clinical trials of checkpoint inhibitors.
نوع الوثيقة: report
اللغة: unknown
العلاقة: Abeshouse, A., Adebamowo, C., Adebamowo, S. N., Akbani, R., Akeredolu, T., Ally, A., Anderson, M. L., Anur, P., Appelbaum, E. L., Armenia, J., Auman, J. T., Bailey, M. H., Baker, L., Balasundaram, M., Balu, S., Barthel, F. P., Bartlett, J., Baylin, S. B., Behera, M., Belyaev, D., Bennett, J., Benz, C., Beroukhim, R., Birrer, M., Bocklage, T., Bodenheimer, T., Boice, L., Bootwalla, M. S., Bowen, J., Bowlby, R., Boyd, J., Brohl, A. S., Brooks, D., Byers, L., Carlsen, R., Castro, P., Chen, H. W., Cherniack, A. D., Chibon, F., Chin, L., Cho, J., Chuah, E., Chudamani, S., Cibulskis, C., Cooper, L. A. D., Cope, L., Cordes, M. G., Crain, D., Curley, E., Danilova, L., Dao, F., Davis, I. J., Davis, L. E., Defreitas, T., Delman, K., Demchok, J. A., Demetri, G. D., Demicco, E. G., Dhalla, N., Diao, L., Ding, L., DiSaia, P., Dottino, P., Doyle, L. A., Drill, E., Dubina, M., Eschbacher, J., Fedosenko, K., Felau, I., Ferguson, M. L., Frazer, S., Fronick, C. C., Fulidou, V., Fulton, L. A., Fulton, R. S., Gabriel, S. B., Gao, J., Gao, Q., Gardner, J., Gastier-Foster, J. M., Gay, C. M., Gehlenborg, N., Gerken, M., Getz, G., Godwin, A. K., Godwin, E. M., Gordienko, E., Grilley-Olson, J. E., Gutman, D. A., Gutmann, D. H., Hayes, D. N., Hegde, A. M., Heiman, D. I., Heins, Z., Helsel, C., Hepperla, A. J., Higgins, K., Hoadley, K. A., Hobensack, S., Holt, R. A., Hoon, D. B., Hornick, J. L., Hoyle, A. P., Hu, X., Huang, M., Hutter, C. M., Iacocca, M., Ingram, D. R., Ittmann, M., Iype, L., Jefferys, S. R., Jones, K. B., Jones, C. D., Jones, S. J. M., Kalir, T., Karlan, B. Y., Karseladze, A., Kasaian, K., Kim, J., Kundra, R., Kuo, H., Ladanyi, M., Lai, P. H., Laird, P. W., Larsson, E., Lawrence, M. S., Lazar, A. J., Lee, S., Lee, D., Lehmann, K. V., Leraas, K. M., Lester, J., Levine, D. A., Li, I., Lichtenberg, T. M., Lin, P., Liu, J., Liu, W., Liu, E. M., Lolla, L., Lu, Y., Ma, Y., Madan, R., Maglinte, D. T., Magliocco, A., Maki, R. G., Mallery, D., Manikhas, G., Mardis, E. R., Mariamidze, A., Marra, M. A., Martignetti, J. A., Martinez, C., Mayo, M., McLellan, M. D., Meier, S., Meng, S., Meyerson, M., Mieczkowski, P. A., Miller, C. A., Mills, G. B., Moore, R. A., Morris, S., Mose, L. E., Mozgovoy, E., Mungall, A. J., Mungall, K., Nalisnik, M., Naresh, R., Newton, Y., Noble, M. S., Novak, J. E., Ochoa, A., Olvera, N., Owonikoko, T. K., Paklina, O., Parfitt, J., Parker, J. S., Pastore, A., Paulauskis, J., Penny, R., Pereira, E., Perou, C. M., Perou, A. H., Pihl, T., Pollock, R. E., Potapova, O., Radenbaugh, A. J., Ramalingam, S. S., Ramirez, N. C., Rathmell, W. K., Raut, C. P., Riedel, R. F., Reilly, C., Reynolds, S. M., Roach, J., Robertson, A. G., Roszik, J., Rubin, B. P., Sadeghi, S., Saksena, G., Salner, A., Sanchez-Vega, F., Sander, C., Schein, J. E., Schmidt, H. K., Schultz, N., Schumacher, S. E., Sekhon, H., Senbabaoglu, Y., Setdikova, G., Shelton, C., Shelton, T., Shen, R., Shi, Y., Shih, J., Shmulevich, I., Sica, G. L., Simons, J. V., Singer, S., Sipahimalani, P., Skelly, T., Socci, N., Sofia, H. J., Soloway, M. G., Spellman, P., Sun, Q., Swanson, P., Tam, A., Tan, D., Tarnuzzer, R., Thiessen, N., Thompson, E., Thorne, L. B., Tong, P., Torres, K. E., van de Rijn, M., Van Den Berg, D. J., Van Tine, B. A., Veluvolu, U., Verhaak, R., Voet, D., Voronina, O., Wan, Y., Wang, Z., Wang, J., Weinstein, J. N., Weisenberger, D. J., Wilkerson, M. D., Wilson, R. K., Wise, L., Wong, T., Wong, W., Wrangle, J., Wu, Y., Wyczalkowski, M., Yang, L., Yau, C., Yellapantula, V., Zenklusen, J. C., Zhang, J. J., Zhang, H., Zhang, H., Zmuda, E., The Cancer Genome Atlas Research, Network (2017) Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas. Cell, 171 (4). 950-965.e28. (Public Dataset)
DOI: 10.1016/j.cell.2017.10.014
الإتاحة: https://doi.org/10.1016/j.cell.2017.10.014Test
http://repository.cshl.edu/id/eprint/39213Test/
رقم الانضمام: edsbas.F0562D80
قاعدة البيانات: BASE
الوصف
DOI:10.1016/j.cell.2017.10.014