A combination of evolutionary trace method, molecular surface accessibility and hydrophobicity analysis to design a high hydrophobicity laccase

التفاصيل البيبلوغرافية
العنوان: A combination of evolutionary trace method, molecular surface accessibility and hydrophobicity analysis to design a high hydrophobicity laccase
المؤلفون: Ai Ling Ong, Raja Farhana Raja Khairuddin, Adiratna Mat Ripen, Saharuddin B. Mohamad
المصدر: In silico biology. 10(3)
سنة النشر: 2012
مصطلحات موضوعية: Models, Molecular, Surface Properties, Molecular Sequence Data, Protein Engineering, Evolution, Molecular, Fungal Proteins, Bioremediation, Genetics, Computer Simulation, Amino Acid Sequence, Polycyclic Aromatic Hydrocarbons, Molecular Biology, Phylogeny, chemistry.chemical_classification, Laccase, Trametes, Sequence Homology, Amino Acid, business.industry, Chemistry, Mutagenesis, General Medicine, Combinatorial chemistry, Biotechnology, Protein Structure, Tertiary, Computational Mathematics, Enzyme, Biodegradation, Environmental, Computational Theory and Mathematics, Amino Acid Substitution, business, Hydrophobic and Hydrophilic Interactions
الوصف: Laccases are industrially attractive enzymes and their applications have expanded to the field of bioremediation. The challenge of today's biotechnology in enzymatic studies is to design enzymes that not only have a higher activity but are also more stable and could fit well with the condition requirements. Laccases are known to oxidize non-natural substrates like polycyclic aromatic hydrocarbons (PAHs). We suppose by increasing the hydrophobicity of laccase, it would increase the chance of the enzyme to meet the hydrophobic substrates in a contamination site, therefore increasing the bioremediation efficacy of PAHs from environment. In this attempt, the applications of evolutionary trace (ET), molecular surface accessibility and hydrophobicity analysis on laccase sequences and laccase's crystal structure (1KYA) are described for optimal design of an enzyme with higher hydrophobicity. Our analysis revealed that Q23A, Q45I, N141A, Q237V, N262L, N301V, N331A, Q360L and Q482A could be promising exchanges to be tested in mutagenesis experiments.
تدمد: 1434-3207
الوصول الحر: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::13da6753affa90db7cc44596c7792182Test
https://pubmed.ncbi.nlm.nih.gov/22430288Test
رقم الانضمام: edsair.doi.dedup.....13da6753affa90db7cc44596c7792182
قاعدة البيانات: OpenAIRE