التفاصيل البيبلوغرافية
| العنوان: |
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. |
| المؤلفون: |
Stourac, Jan, Borko, Simeon, Khan, Rayyan T, Pokorna, Petra, Dobias, Adam, Planas-Iglesias, Joan, Mazurenko, Stanislav, Pinto, Gaspar, Szotkowska, Veronika, Sterba, Jaroslav, Slaby, Ondrej, Damborsky, Jiri, Bednar, David |
| المصدر: |
Briefings in Bioinformatics; Jan2024, Vol. 25 Issue 1, p1-10, 10p |
| مصطلحات موضوعية: |
ANAPLASTIC lymphoma kinase, INTERNET servers, EPIDERMAL growth factor receptors, MEDICAL genetics, MACHINE learning, MUTANT proteins, MOLECULAR pathology |
| الشركة/الكيان: |
EUROPEAN Medicines Agency, UNITED States. Food & Drug Administration |
| مستخلص: |
PredictONCO 1.0 is a unique web server that analyzes effects of mutations on proteins frequently altered in various cancer types. The server can assess the impact of mutations on the protein sequential and structural properties and apply a virtual screening to identify potential inhibitors that could be used as a highly individualized therapeutic approach, possibly based on the drug repurposing. PredictONCO integrates predictive algorithms and state-of-the-art computational tools combined with information from established databases. The user interface was carefully designed for the target specialists in precision oncology, molecular pathology, clinical genetics and clinical sciences. The tool summarizes the effect of the mutation on protein stability and function and currently covers 44 common oncological targets. The binding affinities of Food and Drug Administration/ European Medicines Agency -approved drugs with the wild-type and mutant proteins are calculated to facilitate treatment decisions. The reliability of predictions was confirmed against 108 clinically validated mutations. The server provides a fast and compact output, ideal for the often time-sensitive decision-making process in oncology. Three use cases of missense mutations, (i) K22A in cyclin-dependent kinase 4 identified in melanoma, (ii) E1197K mutation in anaplastic lymphoma kinase 4 identified in lung carcinoma and (iii) V765A mutation in epidermal growth factor receptor in a patient with congenital mismatch repair deficiency highlight how the tool can increase levels of confidence regarding the pathogenicity of the variants and identify the most effective inhibitors. The server is available at https://loschmidt.chemi.muni.cz/predictoncoTest. [ABSTRACT FROM AUTHOR] |
|
Copyright of Briefings in Bioinformatics is the property of Oxford University Press / USA and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.) |
| قاعدة البيانات: |
Complementary Index |
