Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci
| العنوان: | Genome-wide analysis of ATP-binding cassette (ABC) transporters in the sweetpotato whitefly, Bemisia tabaci |
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| المؤلفون: | Wen Xie, Lixia Tian, Youjun Zhang, Rongjun He, Shaoli Wang, Yang Zeng, Xuguo Zhou, Qingjun Wu, Tianxue Song |
| المصدر: | BMC Genomics, Vol 18, Iss 1, Pp 1-16 (2017) BMC Genomics |
| بيانات النشر: | Springer Science and Business Media LLC, 2017. |
| سنة النشر: | 2017 |
| مصطلحات موضوعية: | 0106 biological sciences, 0301 basic medicine, Transcription, Genetic, lcsh:QH426-470, lcsh:Biotechnology, Gene family expansion, Genomics, ATP-binding cassette transporter, Whitefly, Proteomics, Bemisia tabaci, 01 natural sciences, Genome, Hemiptera, Transcriptome, Neonicotinoids, 03 medical and health sciences, chemistry.chemical_compound, Imidacloprid, lcsh:TP248.13-248.65, Botany, Genetics, Animals, biology, Nitro Compounds, biology.organism_classification, Invasiveness, lcsh:Genetics, 010602 entomology, 030104 developmental biology, chemistry, ATP-Binding Cassette Transporters, DNA microarray, Research Article, Biotechnology |
| الوصف: | Background ABC transporter superfamily is one of the largest and ubiquitous groups of proteins. Because of their role in detoxification, insect ABC transporters have gained more attention in recent years. In this study, we annotated ABC transporters from a newly sequenced sweetpotato whitefly genome. Bemisia tabaci Q biotype is an emerging global invasive species that has caused extensive damages to field crops as well as ornamental plants. Results A total of 55 ABC transporters containing all eight described subfamilies (A to H) were identified in the B. tabaci Q genome, including 8 ABCAs, 3 ABCBs, 6 ABCCs, 2 ABCDs, 1 ABCE, 3 ABCFs, 23 ABCGs and 9 ABCHs. In comparison to other species, subfamilies G and H in both phloem- and blood-sucking arthropods are expanded. The temporal expression profiles of these 55 ABC transporters throughout B. tabaci developmental stages and their responses to imidacloprid, a neonicotinoid insecticide, were investigated using RNA-seq analysis. Furthermore, the mRNA expression of 24 ABC transporters (44% of the total) representing all eight subfamilies was confirmed by the quantitative real-time PCR (RT-qPCR). Furthermore, mRNA expression levels estimated by RT-qPCR and RNA-seq analyses were significantly correlated (r = 0.684, p |
| تدمد: | 1471-2164 |
| الوصول الحر: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f27408c3e67496a4f387fb028565cfb2Test https://doi.org/10.1186/s12864-017-3706-6Test |
| حقوق: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....f27408c3e67496a4f387fb028565cfb2 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 14712164 |
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