دورية أكاديمية

De novo transcriptome assembly of the oak processionary moth Thaumetopoea processionea

التفاصيل البيبلوغرافية
العنوان: De novo transcriptome assembly of the oak processionary moth Thaumetopoea processionea
المؤلفون: Johan Zicola, Prasad Dasari, Katharina Klara Hahn, Katharina Ziese-Kubon, Armin Meurer, Timo Buhl, Stefan Scholten
المصدر: BMC Genomic Data, Vol 25, Iss 1, Pp 1-4 (2024)
بيانات النشر: BMC, 2024.
سنة النشر: 2024
المجموعة: LCC:Genetics
مصطلحات موضوعية: Transcriptome, RNA-seq, Oak processionary moth, Allergen, Genetics, QH426-470
الوصف: Abstract Objectives The oak processionary moth (OPM) (Thaumetopoea processionea) is a species of moth (order: Lepidoptera) native to parts of central Europe. However, in recent years, it has become an invasive species in various countries, particularly in the United Kingdom and the Netherlands. The larvae of the OPM are covered with urticating barbed hairs (setae) causing irritating and allergic reactions at the three last larval stages (L3-L5). The aim of our study was to generate a de novo transcriptomic assembly for OPM larvae by including one non-allergenic stage (L2) and two allergenic stages (L4 and L5). A transcriptomic assembly will help identify potential allergenic peptides produced by OPM larvae, providing valuable information for developing novel therapeutic strategies and allergic immunodiagnostic assays. Data Transcriptomes of three larval stages of the OPM were de novo assembled and annotated using Trinity and Trinotate, respectively. A total of 145,251 transcripts from 99,868 genes were identified. Bench-marking universal single-copy orthologues analysis indicated high completeness of the assembly. About 19,600 genes are differentially expressed between the non-allergenic and allergenic larval stages. The data provided here contribute to the characterization of OPM, which is both an invasive species and a health hazard.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 2730-6844
العلاقة: https://doaj.org/toc/2730-6844Test
DOI: 10.1186/s12863-024-01237-7
الوصول الحر: https://doaj.org/article/a54a32e6c47e412080adf849d3593dadTest
رقم الانضمام: edsdoj.54a32e6c47e412080adf849d3593dad
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:27306844
DOI:10.1186/s12863-024-01237-7