دورية أكاديمية

Analysing ambiguities in trypanosomatids taxonomy by barcoding

التفاصيل البيبلوغرافية
العنوان: Analysing ambiguities in trypanosomatids taxonomy by barcoding
المؤلفون: Boucinha, Carolina, Caetano, Amanda R, Santos, Helena LC, Helaers, Raphael, Vikkula, Miikka, Branquinha, Marta Helena, dos Santos, André Luis Souza, Grellier, Philippe, Morelli, Karina Alessandra, d‘Avila-Levy, Claudia Masini
المصدر: Memórias do Instituto Oswaldo Cruz. January 2020 115
بيانات النشر: Instituto Oswaldo Cruz, Ministério da Saúde, 2020.
سنة النشر: 2020
مصطلحات موضوعية: barcode, barcoding, Kinetoplastea, taxonomy, Trypanosomatida, Trypanosomatidae, voucher
الوصف: BACKGROUND Biodiversity screens and phylogenetic studies are dependent on reliable DNA sequences in public databases. Biological collections possess vouchered specimens with a traceable history. Therefore, DNA sequencing of samples available at institutional collections can greatly contribute to taxonomy, and studies on evolution and biodiversity. METHODS We sequenced part of the glycosomal glyceraldehyde phosphate dehydrogenase (gGAPDH) and the SSU rRNA (V7/V8) genes from 102 trypanosomatid cultures, which are available on request at www.colprot.fiocruz.br. OBJECTIVE The main objective of this work was to use phylogenetic inferences, using the obtained DNA sequences and those from representatives of all Trypanosomatidae genera, to generate phylogenetic trees that can simplify new isolates screenings. FINDINGS A DNA sequence is provided for the first time for several isolates, the phylogenetic analysis allowed the classification or reclassification of several specimens, identification of candidates for new genera and species, as well as the taxonomic validation of several deposits. MAIN CONCLUSIONS This survey aimed at presenting a list of validated species and their associated DNA sequences combined with a short historical overview of each isolate, which can support taxonomic and biodiversity research and promote culture collections.
نوع الوثيقة: article
وصف الملف: text/html
اللغة: English
تدمد: 0074-0276
DOI: 10.1590/0074-02760200504
الوصول الحر: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0074-02762020000100322Test
حقوق: info:eu-repo/semantics/openAccess
رقم الانضمام: edssci.S0074.02762020000100322
قاعدة البيانات: SciELO
الوصف
تدمد:00740276
DOI:10.1590/0074-02760200504