مورد إلكتروني
weizhuang128/CRCLM: CRCLM v1.0.0
| العنوان: | weizhuang128/CRCLM: CRCLM v1.0.0 |
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| المؤلفون: | Xu, Yuqiu, Wei, Zhuang, Feng, Mei, Zhu, Dexiang, Mei, Shenglin, Wu, Zhongen, Feng, Qingyang, Chang, Wenju, Ji, Meiling, Liu, Chenglong, Zhu, Yuanyuan, Shen, Lian, Yang, Fan, Chen, Yijiao, Feng, Yuxiong, Xu, Jianmin, Zhu, Di |
| المساهمون: | Xu, Yuqiu, Wei, Zhuang, Xu, Jianmin, Zhu, Di |
| سنة النشر: | 2022 |
| المجموعة: | Zenodo |
| الوصف: | This release is for the paper "Tumor-infiltrated activated B cells suppress liver metastasis of colorectal cancers". Runtime environment: R 3.61 System requirements: At least 32Gb RAM and 32 core CPU R Package requirements: Seurat 3.2.0 Single-cell analysis cite: Butler et al., Nature Biotechnology 2018. monocle 2.16.0 Pseudotime analysis cite: Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li S, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL (2014). "The dynamics and regulators of cell fate decisions are revealed by the pseudo-temporal ordering of single cells." Nature Biotechnology. dplyr 1.0.2 data processing tidyr 1.1.2 data processing reshape2 1.4.4 Data processing Install and Run method: Place each file in the CRCLM/ folder under the same folder named "CRCLM-master/" Create two folders "/filtered_feature_bc_matrix/" and "outputs/" in CRCLM-master/normal_scRNA_seq_analysis/. Put the read file of 10X single cell sequencing into /filtered_feature_bc_matrix/ Install all dependent packages in R, and run R code The results of the operation will be automatically output If want to use the data that has been analyzed to perform other analyses in our paper, please run corresponding R files, please also find the dependent files in CRCLM/. Any questions please email zhuangwei128@@gmail.com Please remove an @ when you send. License: This software is licensed for any non-commercial use after the official paper is published. ; The rest of the files can be found here: https://zenodo.org/record/6848354#.YtOK2-jMJPYTest (10.5281/zenodo.6848354) |
| نوع الوثيقة: | software |
| اللغة: | unknown |
| العلاقة: | https://github.com/weizhuang128/CRCLM/tree/v1.0.0Test; https://zenodo.org/record/6845420Test; https://doi.org/10.5281/zenodo.6845420Test; oai:zenodo.org:6845420 |
| DOI: | 10.5281/zenodo.6845420 |
| الإتاحة: | https://doi.org/10.5281/zenodo.6845420Test https://doi.org/10.5281/zenodo.6845419Test https://zenodo.org/record/6845420Test |
| حقوق: | info:eu-repo/semantics/openAccess |
| رقم الانضمام: | edsbas.8562BEE |
| قاعدة البيانات: | BASE |
| DOI: | 10.5281/zenodo.6845420 |
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