دورية أكاديمية
Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California ; Food Microbiology
| العنوان: | Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California ; Food Microbiology |
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| المؤلفون: | Ottesen, Andrea R., Ramachandran, Padmini, Reed, E., Gu, G., Gorham, S., Ducharme, D., Newell, M., Rideout, Steven L., Turini, T., Hill, T., Strain, E., Brown, E. |
| المساهمون: | Virginia Agricultural Experiment Station |
| بيانات النشر: | Academic Press |
| سنة النشر: | 2018 |
| المجموعة: | VTechWorks (VirginiaTech) |
| مصطلحات موضوعية: | Agroecology, Biogeography, California, Eastern U.S, Genometrakr, Maryland, Metagenome-tracking, Metagenometrakr, North Carolina, Phyllosphere, Phytobiota, Salmonella, Tomatoes, Virginia, Western U.S |
| جغرافية الموضوع: | Virginia, Maryland, North Carolina, California, United States |
| الوصف: | Describing baseline microbiota associated with agricultural commodities in the field is an important step towards improving our understanding of a wide range of important objectives from plant pathology and horticultural sustainability, to food safety. Environmental pressures on plants (wind, dust, drought, water, temperature) vary by geography and characterizing the impact of these variable pressures on phyllosphere microbiota will contribute to improved stewardship of fresh produce for both plant and human health. A higher resolution understanding of the incidence of human pathogens on food plants and co-occurring phytobiota using metagenomic approaches (metagenome tracking) may contribute to improved source attribution and risk assessment in cases where human pathogens become introduced to agro-ecologies. Between 1990 and 2007, as many as 1990 culture-confirmed Salmonella illnesses were linked to tomatoes from as many as 12 multistate outbreaks (Bell et al., 2012; Bell et al., 2015; Bennett et al., 2014; CDC, 2004; CDC, 2007; Greene et al., 2005a; Gruszynski et al., 2014). When possible, source attribution for these incidents revealed a biogeographic trend, most events were associated with eastern growing regions. To improve our understanding of potential biogeographically linked trends in contamination of tomatoes by Salmonella, we profiled microbiota from the surfaces of tomatoes from Virginia, Maryland, North Carolina and California. Bacterial profiles from California tomatoes were completely different than those of Maryland, Virginia and North Carolina (which were highly similar to each other). A statistically significant enrichment of Firmicutes taxa was observed in California phytobiota compared to the three eastern states. Rhizobiaceae, Sphingobacteriaceae and Xanthobacteraceae were the most abundant bacterial families associated with tomatoes grown in eastern states. These baseline metagenomic profiles of phyllosphere microbiota may contribute to improved understanding of how certain ecologies provide ... |
| نوع الوثيقة: | article in journal/newspaper |
| وصف الملف: | application/pdf |
| اللغة: | English |
| تدمد: | 0740-0020 |
| العلاقة: | http://hdl.handle.net/10919/88788Test; https://doi.org/10.1016/j.fm.2018.12.001Test; 79 |
| DOI: | 10.1016/j.fm.2018.12.001 |
| الإتاحة: | https://doi.org/10.1016/j.fm.2018.12.001Test http://hdl.handle.net/10919/88788Test |
| حقوق: | Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International ; http://creativecommons.org/licenses/by-nc-nd/4.0Test/ |
| رقم الانضمام: | edsbas.A70B8EE5 |
| قاعدة البيانات: | BASE |
| تدمد: | 07400020 |
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| DOI: | 10.1016/j.fm.2018.12.001 |