دورية أكاديمية
GABAC : An arithmetic coding solution for genomic data
| العنوان: | GABAC : An arithmetic coding solution for genomic data |
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| المؤلفون: | Voges, Jan, Paridaens, Tom, Müntefering, Fabian, Mainzer, Liudmila S., Bliss, Brian, Yang, Mingyu, Ochoa, Idoia, Fostier, Jan, Ostermann, Jörn, Hernaez, Mikel |
| المصدر: | Bioinformatics 36 (2020), Nr. 7 |
| بيانات النشر: | Oxford : Oxford Univ. Press |
| سنة النشر: | 2020 |
| المجموعة: | Institutional Repository of Leibniz Universität Hannover |
| مصطلحات موضوعية: | genomic data, International Organization for Standardization (ISO), Moving Picture Experts Group (MPEG), MPEG-G compliant entropy codec, GABAC, coding, ddc:004, ddc:570 |
| الوصف: | Motivation: In an effort to provide a response to the ever-expanding generation of genomic data, the International Organization for Standardization (ISO) is designing a new solution for the representation, compression and management of genomic sequencing data: the Moving Picture Experts Group (MPEG)-G standard. This paper discusses the first implementation of an MPEG-G compliant entropy codec: GABAC. GABAC combines proven coding technologies, such as context-adaptive binary arithmetic coding, binarization schemes and transformations, into a straightforward solution for the compression of sequencing data. Results: We demonstrate that GABAC outperforms well-established (entropy) codecs in a significant set of cases and thus can serve as an extension for existing genomic compression solutions, such as CRAM. © 2019 The Author(s). Published by Oxford University Press. |
| نوع الوثيقة: | article in journal/newspaper |
| اللغة: | English |
| تدمد: | 0266-7061 1367-4803 |
| العلاقة: | ESSN:1367-4811; ESSN:1460-2059; http://dx.doi.org/10.15488/10852Test; https://www.repo.uni-hannover.de/handle/123456789/10934Test |
| DOI: | 10.15488/10852 |
| الإتاحة: | https://doi.org/10.15488/10852Test https://doi.org/10.1093/bioinformatics/btz922Test https://www.repo.uni-hannover.de/handle/123456789/10934Test |
| حقوق: | CC BY-NC 4.0 Unported ; https://creativecommons.org/licenses/by-nc/4.0Test/ ; frei zugänglich |
| رقم الانضمام: | edsbas.BBF97425 |
| قاعدة البيانات: | BASE |
Full Text Finder | تدمد: | 02667061 13674803 |
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| DOI: | 10.15488/10852 |