المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/journal_contribution/Uncropped_images_of_the_northern_blots_PAA_gels_slot_blots_and_western_blots_used_in_this_study_/21824301Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s003Test

المؤلفون: Jenni A. Hayward (10063377), Esther Rajendran (6321464), Soraya M. Zwahlen (10063380), Pierre Faou (1772059), Giel G. van Dooren (10063383)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Evolutionary Biology, Environmental Sciences not elsewhere classified, Physical Sciences not elsewhere classified, QCR, Toxoplasma gondii parasites, apicomplexan Toxoplasma gondii, Complex III activity, Complex III components, mass spectrometry-based proteomic a., mitochondrial oxygen consumption, Complex III, apicomplexan parasites, Complex III integrity, protein composition, mitochondrial electron transport chain

العلاقة: https://figshare.com/articles/journal_contribution/Sequences_of_oligonucleotides_primers_and_gBlocks_used_in_this_study_/13680528Test

الإتاحة: https://doi.org/10.1371/journal.ppat.1009211.s015Test

المؤلفون: Eskelin, Katri, Varjosalo, Markku, Ravantti, Janne, Makinen, Kristiina

المساهمون: Molecular and Translational Virology, Molecular and Integrative Biosciences Research Programme, Molecular Systems Biology, Institute of Biotechnology, Genome-Scale Biology (GSB) Research Program, Department of Microbiology, Viikki Plant Science Centre (ViPS), Plant-Virus Interactions

مصطلحات موضوعية: Agrobacterium tumefaciens, asymmetrical flow field-flow fractionation, bioinformatics, LC-MS/MS, Potato virus A, riboproteome, ribosomes, Nicotiana benthamiana, MESSENGER-RNAS, EUKARYOTIC TRANSLATION, CYTOSOLIC RIBOSOMES, PROTEIN-COMPOSITION, MOLECULAR-BIOLOGY, GENE-EXPRESSION, ARABIDOPSIS, GENOME, VPG, IDENTIFICATION, 1183 Plant biology, microbiology, virology

وصف الملف: application/pdf

العلاقة: We acknowledge Saikat Bhattacharjee, Steven Whitham, Julia Bailey-Serres and Peter Moffett for the generation and provision of the transgenic N.benthamiana plant lines 2e and 6j expressing FLAG-RPL18 from A.thaliana. Antibodies against eIF4E, eIFiso4E, PABP, eIF4G and eIFiso4G were kind gifts from Professor Karen Browning (University of Texas, UT, USA). We acknowledge Marta Bai for her help with initial bioinformatics analyses. This work was supported by the Academy of Finland (grants 1138329 and 1298254 to K.M., 127969 to K.E. and 1258978 to M.V.) and grants from the Jane and Aatos Erkko Foundation (4704372) and Jenny and Antti Wihuri Foundation to K.M.; Eskelin , K , Varjosalo , M , Ravantti , J & Makinen , K 2019 , ' Ribosome profiles and riboproteomes of healthy and Potato virus A- and Agrobacterium-infected Nicotiana benthamiana plants ' , Molecular Plant Pathology , vol. 20 , no. 3 , pp. 392-409 . https://doi.org/10.1111/mpp.12764Test; ORCID: /0000-0002-1436-1216/work/55061415; ORCID: /0000-0002-8578-7230/work/55062241; ORCID: /0000-0002-1340-9732/work/55062977; 85058045665; ed68e722-7fab-485e-bad1-bfa6475e42e6; http://hdl.handle.net/10138/299993Test; 000459797000008

الإتاحة: http://hdl.handle.net/10138/299993Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/dataset/Numerical_values_used_to_generate_the_graphs_in_Figs_1C_1E_and_3C_/21824295Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s002Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/dataset/cRACE_data_underlying_Fig_5A_and_5B_/21824304Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s004Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/dataset/The_numerical_values_underlying_Fig_1B_/21824292Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s001Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/figure/Bioanalyzer_analyses_of_total_RNA_preparations_/21824310Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s006Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/dataset/Mass_spectrometry_data_underlying_Fig_6_/21824307Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s005Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/figure/Analysis_of_rRNA_fragments_by_cRACE_/21824325Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s011Test

المؤلفون: Lydia Hadjeras (13235616), Marie Bouvier (260008), Isabelle Canal (14334420), Leonora Poljak (688989), Quentin Morin-Ogier (14334423), Carine Froment (848571), Odile Burlet-Schlitz (14334426), Lina Hamouche (14334429), Laurence Girbal (389237), Muriel Cocaign-Bousquet (255722), Agamemnon J. Carpousis (14334432)

مصطلحات موضوعية: Biochemistry, Microbiology, Cell Biology, Genetics, Molecular Biology, Infectious Diseases, many bacterial species, generating stable molecules, escherichia coli <, type cells control, aberrant protein composition, endoribonuclease rnase e, mutant strain interfere, inner membrane proteins, div >< p, cotranscriptional ribosome assembly, based rna degradosomes, attached rna degradosomes, rrna degradation could, slower mrna degradation, contain rrna precursors, rnase e cleavage, rnase e, rna degradosomes, ribosome assembly, mutant strain, rrna precursors, degradation shape, whereas protein, posttranscriptional control

العلاقة: https://figshare.com/articles/figure/Mapping_of_rRNA_5_ends_by_RACE_/21824316Test

الإتاحة: https://doi.org/10.1371/journal.pbio.3001942.s008Test