Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex
| العنوان: | Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex |
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| المؤلفون: | Martijn Rep, Jenn-Wen Huang, María Mercedes Scandiani, Jin-Rong Xu, Kemal Kazan, Kathryne L. Everts, Lily W. Lofton, Véronique Edel-Hermann, Adnan Šišić, Macit Ilkit, Adriaana Jacobs, Anna Prigitano, Abdullah M. S. Al-Hatmi, Carmen Ruiz-Roldán, Marcio Nucci, Baharuddin Salleh, N.M.I. Mohamed Nor, Takayuki Aoki, Martin I. Chilvers, Chyanna McGee, Dan Vanderpool, Stephen A. Rehner, Sara R. May, David G. Schmale, Cong Jiang, Robert H. Proctor, Tapani Yli-Mattila, Frank N. Martin, Michel Monod, Hao-Xun Chang, Theo van der Lee, Kerry O'Donnell, Paul E. Verweij, Ning Zhang, Matias Pasquali, Latiffah Zakaria, Erik Lysøe, Matthew H. Laurence, Karin Jacobs, Tatiana Gagkaeva, Alicia G. Luque, Linda J. Harris, Lisa J. Vaillancourt, Edward C. Y. Liew, Gerardo Rodríguez-Alvarado, Thomas R. Gordon, Kevin K. Fuller, Balázs Brankovics, Jason E. Stajich, Gerda Fourie, Christopher W. Smyth, Christopher Toomajian, Gilvan Ferreira da Silva, Stanley Freeman, Brian L. Wickes, Anna M. Tortorano, Santiago Gutiérrez, Antonio Logrieco, Li-Jun Ma, John C. Kennell, Donald M. Gardiner, H. Corby Kistler, Xiao-Bing Yang, Scott E. Gold, Johanna Del Castillo-Múnera, Stéphane Ranque, Jie Wang, Josep Guarro, Cheryl L. Blomquist, Emerson M. Del Ponte, Sean X. Zhang, Mitchell G. Roth, Beth K. Gugino, Robert L. Bowden, Nora A. Foroud, Omer Frenkel, Maria Carmela Esposto, Emma C. Wallace, Rajagopal Subramaniam, Quirico Migheli, Grit Walther, Kathryn E. Bushley, Marcele Vermeulen, Rasmus John Normand Frandsen, Yin-Won Lee, Hye-Seon Kim, Robert E. Marra, Amgad A. Saleh, Tomasz Kulik, Gary C. Bergstrom, Anne D. van Diepeningen, María del Mar Jiménez-Gasco, Joseph D. Carrillo, Seogchan Kang, Lester W. Burgess, Manuel S. López-Berges, Martha M. Vaughan, Brett A. Summerell, Michael J. Wingfield, Gary E. Vallad, Haruhisa Suga, Françoise Munaut, Altus Viljoen, Nathan P. Wiederhold, Paul Nicholson, Ana K. Machado Wood, Eduard Venter, Giuseppina Mulè, Marieka Gryzenhout, Irene Barnes, G. Sybren de Hoog, Daren W. Brown, Christian Steinberg, Virgilio Balmas, Ludwig H. Pfenning, Cees Waalwijk, László Hornok, Sylvia Patricia Fernández-Pavía, Sung-Hwan Yun, Xue Zhang, Susan P. McCormick, Madan K. Bhattacharyya, José F. Cano-Lira, Michael Freitag, Dylan P. G. Short, Theresa Lee, Wade H. Elmer, Yong-Hwan Lee, Antonio Moretti, Todd J. Ward, Wanquan Chen, Martin Urban, David M. Geiser, Javier Diéguez-Uribeondo, Emma Theodora Steenkamp, Chi-Yu Chen, Jeffrey J. Coleman, Jacques F. Meis, Antonio Di Pietro, Imane Laraba, Hao Zhang, Anthony E. Glenn, Gary P. Munkvold, Tsutomu Arie, John F. Leslie, Sofia Noemi Chulze, Akif Eskalen, Nancy F. Gregory, Jonathan Scauflaire, Cheng-Fang Hong, Mónika Homa, Hokyoung Son, Ellie J. Spahr, Jason A. Smith, Kim E. Hammond-Kosack, Mark Busman, Christina A. Cuomo, Lindy J. Rose, Oliver Kurzai, Cassandra L. Swett, Hyunkyu Sang, Z. Wilhelm de Beer, Gretchen A. Kuldau, Antonella Susca, Diane Mostert, Matthew T. Kasson, Lynn Epstein, Terry J. Torres-Cruz |
| المساهمون: | Agroécologie [Dijon], Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté [COMUE] (UBFC)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Vecteurs - Infections tropicales et méditerranéennes (VITROME), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées [Brétigny-sur-Orge] (IRBA) |
| المصدر: | Phytopathology 111 (2021) 7 Phytopathology Phytopathology, 2021, 111 (7), pp.1064-1079. ⟨10.1094/phyto-08-20-0330-le⟩ Phytopathology, American Phytopathological Society, 2021, 111 (7), pp.1064-1079. ⟨10.1094/phyto-08-20-0330-le⟩ Phytopathology, 111, 7, pp. 1064-1079 Geiser, D M, Al-Hatmi, A M S, Aoki, T, Arie, T, Balmas, V, Barnes, I, Bergstrom, G C, Bhattacharyya, M K, Blomquist, C L, Bowden, R L, Brankovics, B, Brown, D W, Burgess, L W, Bushley, K, Busman, M, Cano-Lira, J F, Carrillo, J D, Chang, H-X, Chen, C-Y, Chen, W, Chilvers, M, Chulze, S, Coleman, J J, Cuomo, C A, de Beer, Z W, de Hoog, G S, Del Castillo-Múnera, J, Del Ponte, E M, Diéguez-Uribeondo, J, Di Pietro, A, Edel-Hermann, V, Elmer, W H, Epstein, L, Eskalen, A, Esposto, M C, Everts, K L, Fernández-Pavía, S P, da Silva, G F, Foroud, N A, Fourie, G, Frandsen, R J N, Freeman, S, Freitag, M, Frenkel, O, Fuller, K K, Gagkaeva, T, Gardiner, D M, Glenn, A E, Gold, S E, Gordon, T R, Gregory, N F, Gryzenhout, M, Guarro, J, Gugino, B K, Gutierrez, S, Hammond-Kosack, K E, Harris, L J, Homa, M, Hong, C-F, Hornok, L, Huang, J-W, Ilkit, M, Jacobs, A, Jacobs, K, Jiang, C, Jiménez-Gasco, M D M, Kang, S, Kasson, M T, Kazan, K, Kennell, J C, Kim, H-S, Kistler, H C, Kuldau, G A, Kulik, T, Kurzai, O, Laraba, I, Laurence, M H, Lee, T, Lee, Y-W, Lee, Y-H, Leslie, J F, Liew, E C Y, Lofton, L W, Logrieco, A F, S López-Berges, M, Luque, A G, Lysøe, E, Ma, L-J, Marra, R E, Martin, F N, May, S R, McCormick, S P, McGee, C, Meis, J F, Migheli, Q, Mohamed Nor, N M I, Monod, M, Moretti, A, Mostert, D, Mulè, G, Munaut, F, Munkvold, G P, Nicholson, P, Nucci, M, O'Donnell, K, Pasquali, M, Pfenning, L H, Prigitano, A, Proctor, R H, Ranque, S, Rehner, S A, Rep, M, Rodríguez-Alvarado, G, Rose, L J, Roth, M G, Ruiz-Roldán, C, Saleh, A A, Salleh, B, Sang, H, Scandiani, M M, Scauflaire, J, Schmale, D G, Short, D P G, Šišić, A, Smith, J A, Smyth, C W, Son, H, Spahr, E, Stajich, J E, Steenkamp, E, Steinberg, C, Subramaniam, R, Suga, H, Summerell, B A, Susca, A, Swett, C L, Toomajian, C, Torres-Cruz, T J, Tortorano, A M, Urban, M, Vaillancourt, L J, Vallad, G E, van der Lee, T A J, Vanderpool, D, van Diepeningen, A D, Vaughan, M M, Venter, E, Vermeulen, M, Verweij, P E, Viljoen, A, Waalwijk, C, Wallace, E C, Walther, G, Wang, J, Ward, T J, Wickes, B L, Wiederhold, N P, Wingfield, M J, Wood, A K M, Xu, J-R, Yang, X-B, Yli-Mattila, T, Yun, S-H, Zakaria, L, Zhang, H, Zhang, N, Zhang, S X & Zhang, X 2021, ' Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex ', Phytopathology, vol. 111, no. 7, PHYTO08200330LE . https://doi.org/10.1094/PHYTO-08-20-0330-LETest Phytopathology, 111(7), 1064-1079 Digital.CSIC. Repositorio Institucional del CSIC instname Phytopathology, 111, 1064-1079 |
| سنة النشر: | 2021 |
| مصطلحات موضوعية: | 0106 biological sciences, 0301 basic medicine, Fusarium, Species complex, Evolution, [SDV]Life Sciences [q-bio], lnfectious Diseases and Global Health Radboud Institute for Molecular Life Sciences [Radboudumc 4], Plant Science, 01 natural sciences, 03 medical and health sciences, Monophyly, Biointeractions and Plant Health, All institutes and research themes of the Radboud University Medical Center, Phylogenetics, Genus, Polyphyly, Genetics, Clade, Phylogeny, Fungal pathogens, Plant Diseases, 2. Zero hunger, Fungal Pathogens, biology, 15. Life on land, biology.organism_classification, 030104 developmental biology, lnfectious Diseases and Global Health Radboud Institute for Health Sciences [Radboudumc 4], Evolutionary biology, Taxonomy (biology), EPS, Agronomy and Crop Science, 010606 plant biology & botany |
| الوصف: | International audience; Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. Previously (Geiser et al. 2013; Phytopathology 103:400-408. 2013), the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani Species Complex (FSSC). Subsequently, this concept was challenged by one research group (Lombard et al. 2015 Studies in Mycology 80: 189-245) who proposed dividing Fusarium into seven genera, including the FSSC as the genus Neocosmospora, with subsequent justification based on claims that the Geiser et al. (2013) concept of Fusarium is polyphyletic (Sandoval-Denis et al. 2018; Persoonia 41:109-129). Here we test this claim, and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species recently described as Neocosmospora were recombined in Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural and practical taxonomic option available. |
| وصف الملف: | application/pdf; application/octet-stream |
| تدمد: | 0031-949X |
| الوصول الحر: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9b3daf1aae4b891c338e7f7a5f21e587Test https://hdl.handle.net/2066/241127Test |
| حقوق: | OPEN |
| رقم الانضمام: | edsair.doi.dedup.....9b3daf1aae4b891c338e7f7a5f21e587 |
| قاعدة البيانات: | OpenAIRE |
| تدمد: | 0031949X |
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